PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.304110.1
Common NameCsa_5G148680, LOC101207994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 261aa    MW: 28837.9 Da    PI: 4.7349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.304110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed llv++++q G g+W++ +++ g+ R++k+c++rw +yl
   Cucsa.304110.1 15 KGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMNYL 62
                     79******************************99************97 PP

2Myb_DNA-binding537.9e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   Cucsa.304110.1  68 RGNITADEDDLIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9721062IPR017930Myb domain
SuperFamilySSF466891.26E-2912109IPR009057Homeodomain-like
SMARTSM007173.8E-121464IPR001005SANT/Myb domain
PfamPF002496.1E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-231669IPR009057Homeodomain-like
CDDcd001674.06E-91762No hitNo description
PROSITE profilePS5129426.45763117IPR017930Myb domain
SMARTSM007176.3E-1667115IPR001005SANT/Myb domain
PfamPF002495.1E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2670117IPR009057Homeodomain-like
CDDcd001675.72E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRTSSCCSK GGLHKGPWTA REDALLVNYI QQNGEGHWRA LPKKAGLLRC GKSCRLRWMN  60
YLRPDIKRGN ITADEDDLII KLHSLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKRLAII  120
TKDNAGEAKK ESNGETSNTR KATEVWSFCN DDNLSNGVGS ELLLSSGNQG GEDGGSRGGG  180
ETDQLGVNGD EEIVEKVKGG REELEESGDF FGGCEGLYKG LSWNGSERID EIEDDSYQQL  240
LNLEGEDYIQ LESFIDYFLI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143947.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A0A0KNQ60.0A0A0A0KNQ6_CUCSA; Uncharacterized protein
STRINGPOPTR_0003s14430.17e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-63myb domain protein 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]